The Genome Institute Publications
Matsushita H, Vesely MD, Koboldt DC, Rickert CG, Uppaluri R, Magrini VJ, Arthur CD, White…
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting.
Nature. 2012 Feb 8 [Epub ahead of print]. Link | View Abstract
Koboldt DC, Zhang Q, Larson DE, Shen D, McLellan MD, Lin L, Miller CA, Mardis…
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing.
Genome Res. 2012 Feb 2. [Epub ahead of print] PubMed | View Abstract
Chen F, Ding L.
Co-survival of the fittest few: mosaic amplification of receptor tyrosine kinases in glioblastoma.
Genome Biol. 2012 Jan 30;13(1):141. [Epub ahead of print] PubMed | View Abstract
St. Jude Children's Research Hospital-Washington University Pediatric Cancer Genome Project, Wu G, Broniscer A, McEachron…
Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.
Nat Genet. 2012 Jan 29 [Epub ahead of print] PubMed | View Abstract
Mitreva M.
The genome of a blood fluke associated with human cancer.
Nat Genet. 2012 Jan 27;44(2):116-8. doi: 10.1038/ng.1082. PubMed | View Abstract
Maher CA, Wilson RK.
Chromothripsis and human disease: piecing together the shattering process.
Cell. 2012 Jan 20;148(1-2):29-32. PubMed | View Abstract
Koboldt DC, Larson DE, Chen K, Ding L, Wilson RK.
Massively parallel sequencing approaches for characterization of structural variation.
Methods Mol Biol. 2012;838:369-84. PubMed | View Abstract
Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young…
Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.
Nature. 2012 Jan 11. doi: 10.1038/nature10738. [Epub ahead of print] PubMed | View Abstract
Zhang J, Ding L, Holmfeldt L, Wu G, Heatley SL, Payne-Turner D, Easton J, Chen…
The genetic basis of early T-cell precursor acute lymphoblastic leukaemia.
Nature. 2012 Jan 11;481(7380):157-63. doi: 10.1038/nature10725. PubMed | View Abstract
Zhang J, Benavente CA, McEvoy J, Flores-Otero J, Ding L, Chen X, Ulyanov A, Wu…
A novel retinoblastoma therapy from genomic and epigenetic analyses.
Nature. 2012 Jan 11. doi: 10.1038/nature10733. [Epub ahead of print] PubMed | View Abstract
Swart EC, Nowacki M, Shum J, Stiles H, Higgins BP, Doak TG, Schotanus K, Magrini…
The Oxytricha trifallax mitochondrial genome.
Genome Biol Evol. 2011 Dec 16. [Epub ahead of print] PubMed | View Abstract
Smajs D, Norris SJ, Weinstock GM.
Genetic diversity in Treponema pallidum: Implications for pathogenesis, evolution and molecular diagnostics of syphilis and yaws.
Infect Genet Evol. 2011 Dec 15. [Epub ahead of print] PubMed | View Abstract
Graubert T, Shen D, Ding L, Okeyo-Owuor T, Lunn CL, Shao J, Krysiak K, Harris…
Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes
Nature Genetics. 2011 Dec 11. [Advanced online publication] PubMed | View Abstract
Larson DE, Harris CC, Chen K, Koboldt DC, Abbott TE, Dooling DJ, Ley TJ, Mardis…
SomaticSniper: Identification of Somatic Point Mutations in Whole Genome Sequencing Data.
Bioinformatics. 2011 Dec 6. [Epub ahead of print] PubMed | View Abstract
Martin J, Abubucker S, Heizer E, Taylor CM, Mitreva M.
Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data.
Nucleic Acids Res. 2011 Dec 1. [Epub ahead of print] PubMed | View Abstract
Graubert TA, Mardis ER.
Genomics of acute myeloid leukemia.
Cancer J. 2011 Nov;17(6):487-91. PubMed | View Abstract
Holtz LR, Wylie KM, Sodergren E, Jiang Y, Franz CJ, Weinstock GM, Storch GA, Wang…
Astrovirus MLB2 Viremia in Febrile Child.
Emerg Infect Dis. 2011 Nov;17(11):2050-2. PubMed | View Abstract
Yao G, Ye L, Gao H, Minx P, Warren WC, Weinstock GM.
Graph accordance of next-generation sequence assemblies.
Bioinformatics. 2011 Oct 23. [Epub ahead of print] PubMed | View Abstract
Soblik H, Younis AE, Mitreva M, Renard BY, Kirchner M, Geisinger F, Steen H, Brattig…
Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti: Identification of stage-specific protease.
Mol Cell Proteomics. 2011 Oct 16. [Epub ahead of print]. PubMed | View Abstract
Lindblad-Toh K, Garber M, Zuk O, Lin MF, Parker BJ, Washietl S, Kheradpour P, Ernst…
A high-resolution map of human evolutionary constraint using 29 mammals.
Nature. 2011 Oct 12;478(7370):476-82. doi: 10.1038/nature10530. PubMed | View Abstract
Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, Armbrust EV, Eisen JA, Worden…
Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges.
Environ Microbiol. 2011 Sep 14. doi: 10.1111/j.1462-2920.2011.02576.x. [Epub ahead of print] PubMed | View Abstract
Marth GT, Yu F, Indap AR, Garimella K, Gravel S, Leong WF, Tyler-Smith C, Bainbridge…
The functional spectrum of low-frequency coding variation.
Genome Biol. 2011 Sep 14;12(9):R84. [Epub ahead of print] PubMed | View Abstract
Arias CA, Panesso D, McGrath DM, Qin X, Mojica MF, Miller C, Diaz L, Tran…
Genetic Basis for In Vivo Daptomycin Resistance in Enterococci
N Engl J Med. 2011 Sep 8;365(10):892-900. PubMed | View Abstract
Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters…
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.
Genome Biol. 2011 Aug 29;12(8):R81. [Epub ahead of print] PubMed | View Abstract
Younis AE, Geisinger F, Ajonina-Ekoti I, Soblik H, Steen H, Mitreva M, Erttmann KD, Perbandt…
Stage-specific excretory-secretory small heat shock proteins from the parasitic nematode Strongyloides ratti--putative links to host's intestinal mucosal defense system.
FEBS J. 2011 Sep;278(18):3319-36. doi: 10.1111/j.1742-4658.2011.08248.x. Epub 2011 Aug 24. PubMed | View Abstract
